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View Structure Prediction Details

Protein: LTL1_ARATH
Organism: Arabidopsis thaliana
Length: 366 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LTL1_ARATH.

Description E-value Query
Range
Subject
Range
gi|215765683, gi... - gi|51979502|ref|XP_507548.1| PREDICTED P0643F09.14 gene product [Oryza sativa (japonica cultivar-gro...
343.0 [0..1] [362..1]

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Predicted Domain #1
Region A:
Residues: [1-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNINCSPLGF LISLFFIVTF LAPQVKSRAF FVFGDSLVDN GNNDYLVTTA RADNYPYGID  60
   61 YPTRRPTGRF SNGLNIPDII SEAIGMPSTL PYLSPHLTGE NLLVGANFAS AGIGILNDTG 120
  121 IQFVNIIRIS KQMEYFEQYQ LRVSALIGPE ATQQLVNQAL VLITLGGNDF VNNYYLIPFS 180
  181 ARSRQYALPD YVVYLISEYG KILRKLYELG ARRVLVTGTG AMGCAPAELA QHSRNGECYG 240
  241 ALQTAAALFN PQLVDLIASV NAEIGQDVFV AANAYQMNMD YLSNPEQFGF VTSKVACCGQ 300
  301 GPYNGIGLCT PVSNLCPNRD LYAFWDAFHP TEKANRIIVN QILTGSSKYM HPMNLSTAML 360
  361 LDSSKI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.15
Match: 1escA
Description: THE MOLECULAR MECHANISM OF ENANTIORECOGNITION BY ESTERASES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.471286748048633 bayes_pls_golite062009
catalytic activity 0.319044203629006 bayes_pls_golite062009
protein binding 0.0277911089352154 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle