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View Structure Prediction Details

Protein: GSXL1_ARATH
Organism: Arabidopsis thaliana
Length: 468 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSXL1_ARATH.

Description E-value Query
Range
Subject
Range
gi|71062053, gi|... - gi|71082940|ref|YP_265659.1| dihydrolipoyl dehydrogenase [Candidatus Pelagibacter ubique HTCC1062], ...
271.0 [0..6] [448..1]

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Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVITSRAR HVAVIGLGAA GLVAVRELRR EGHTVIGFER EKHVGGLWVY TDRVDSDSVS  60
   61 VDPDRTIV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 2gv8A
Description: No description for 2gv8A was found.

Predicted Domain #2
Region A:
Residues: [69-468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSSIYQSLRT NLPRECMGYS DFPFVTRSSD GDPRRYPDHR EVLMYLQDFA KEFKIEDMIR  60
   61 FETEVLCVEP SPENNRKWRV QFKSSNGVSG EEIFDAVVVC NGHFTEPRLA HIPGIESWPG 120
  121 KQIHSHNYRI PDPFKDEVVI VIGSQASGND ISTDIATIAK EVHISSKMVA SDSYGCYDNL 180
  181 RIHPTIYRAR EDGSVVFRNG KVVFADAIVH CTGYKYHFPF LKTSGYVTVE DNRVGPLYKH 240
  241 VFPPALAPGI SFIGLPFMGL QFFMFEIQSK WVASVLSGRV KLPAEDKMME EAVAFYSKLE 300
  301 DLGIPKRYTH FLTDPRGNPM LGTFKPEDAV VISQSDYFNW IAKQCGCTSI ERWRERLYNV 360
  361 AIKKVFFGGD SYRDRWDDDQ LIEEVYREFA KLKPNQDCSS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.154902
Match: 1nhqA
Description: CRYSTALLOGRAPHIC ANALYSES OF NADH PEROXIDASE CYS42ALA AND CYS42SER MUTANTS: ACTIVE SITE STRUCTURE, MECHANISTIC IMPLICATIONS, AND AN UNUSUAL ENVIRONMENT OF ARG303
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on sulfur group of donors 3.5210023773836 bayes_pls_golite062009
catalytic activity 2.35839632763616 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.80998690919987 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 1.66219747860319 bayes_pls_golite062009
disulfide oxidoreductase activity 1.61791469515657 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 1.2330319552852 bayes_pls_golite062009
oxidoreductase activity 1.03218111092471 bayes_pls_golite062009
binding 0.484552948355516 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle