YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15228651, gi|...
Organism: Arabidopsis thaliana
Length: 290 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15228651, gi|....

Description E-value Query
Range
Subject
Range
gi|21593560 - gi|21593560|gb|AAM65527.1| unknown [Arabidopsis thaliana]
217.0 [0..1] [290..1]

Back

Predicted Domain #1
Region A:
Residues: [1-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTFSTSFLF LLLVFCLIGS LAADDLQHKS GRDVCSGGSD LRTPDIRLNR PTDSVVGNCP  60
   61 TEASPLVMAD DEKYGNKMVI SLTPRLYDYV LNNVREHEIL KQLREETAIS QIQVSPDQAQ 120
  121 LLAMLVEILG AKRCIEVGVY TGYSSLAVAL VLPESGRLVA CDKDANALEV AKRYYELAGV 180
  181 SHKVTVKHGL AAESLMSMIQ NGEESSYDFA FLDADKAMYQ EYFESLLRLV RVGGVIVIDN 240
  241 VLWHGWVADS TVNDERTISL RNFNKKLMDD QRVSISMVSI GDGMTICRKR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.39794
Match: 1suiA
Description: Alfalfa caffeoyl coenzyme A 3-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.25333584501255 bayes_pls_golite062009
transferase activity 0.999964866871553 bayes_pls_golite062009
methyltransferase activity 0.558878917426836 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.557560946446304 bayes_pls_golite062009
binding 0.348263200169904 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.0605581837493382 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle