YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|7268222, gi|1...
Organism: Arabidopsis thaliana
Length: 167 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7268222, gi|1....

Description E-value Query
Range
Subject
Range
gi|114627384 - gi|114627384|ref|XP_001153928.1| PREDICTED: similar to L7a protein [Pan troglodytes]
195.0 [0..1] [167..186]

Back

Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGVTPINPQ KKIEADSNPV KESDYYEGER LTHLLDLIQR GIETSKLSNV NSLPEKIWLK  60
   61 KQIAIGINEV TRVLERMNPN NTSDQQQNPK QLQVVILVAD CKPRMLTKHI PNLAASRNVP 120
  121 VLYVRDNKRA SLRLGELVKL KTALAIGIKA RGNDLNLLLK QILPRDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.69897
Match: 1rlgA
Description: Molecular basis of Box C/D RNA-protein interaction: co-crystal structure of the Archaeal sRNP intiation complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle