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View Structure Prediction Details

Protein: gi|30693481, gi|...
Organism: Arabidopsis thaliana
Length: 606 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30693481, gi|....

Description E-value Query
Range
Subject
Range
gi|30693486 - gi|30693486|ref|NP_568572.2| structural constituent of ribosome [Arabidopsis thaliana]
900.0 [0..1] [606..1]
gi|124360948, gi... - gi|87240355|gb|ABD32213.1| Protein of unknown function DUF1666 [Medicago truncatula], gi|124360948|g...
690.0 [0..5] [605..72]
gi|115479143, gi... - gi|50251471|dbj|BAD28536.1| unknown protein [Oryza sativa Japonica Group], gi|125605683|gb|EAZ44719....
506.0 [0..209] [606..760]
gi|47824937 - gi|47824937|gb|AAT38712.1| hypothetical protein SDM1_34t00007 [Solanum demissum]
363.0 [0..346] [606..1]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIELENSGIE DEEEVSESPK LVFKFAFQTE TFERLSREGY RSLSDDCGVE SESSFLSSDS  60
   61 SPVIFTAAAR KYETPSAKNL TFVLENPKAA TFRVEDCLKE KQEKTEDLGY SVFHGEDKVK 120
  121 TEDYSVSSFK KKKIRFLTEE DFLESDSDFV DSSQTFTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDEDGFLSDS DFAETSLKKG QNRKSDNSGS GSDSEEEEEE DTNGFESLWE HQDLIEQLKM  60
   61 EMKKVKAIGG LTTILEEEEE DDDCPKIMED LKPWRIEEEK KFKHVDTIGE VHKFHRSYRE 120
  121 RMRKLDILSF QKSYALGLLQ SKSPQQATST LGSNPSQTSF SSVFSVNIRL WKAKKSE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [336-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEPMVQFVKE IQGELENVYV GQMCLSWEIL HWQYEKAIEL LESDVYGSRR YNEVAGEFQQ  60
   61 FQVLLQRFLE NEPFEEPRVQ HYIKRRCVLR NLLQIPVIRE DGNKDKKNGR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.934 a.216.1 Description not found.

Predicted Domain #4
Region A:
Residues: [446-606]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRDYEENNDG VIKSDQLVEI MEETIRLFWR FVRCDKLTSS IHDQKSRTKS QIEPDHEEDS  60
   61 EDLEMFAEVK SQLQNKEKRL RDVLKSERCI IRRFQKHKEE DSTEDQVLHF FSQVDMKLVT 120
  121 RVLNMSKLTR DHLVWCHNKL TKINFVNRRL HLDPSFCLFP C

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle