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View Structure Prediction Details

Protein: SBT14_ARATH
Organism: Arabidopsis thaliana
Length: 777 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SBT14_ARATH.

Description E-value Query
Range
Subject
Range
gi|110740849 - gi|110740849|dbj|BAE98521.1| putative subtilisin-like serine proteinase [Arabidopsis thaliana]
560.0 [0..1] [777..1]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLSLSSIF FVFPLLLCFF SPSSSSSDGL ESYIVHVQRS HKPSLFSSHN NWHVSLLRSL  60
   61 PSSPQPATLL YSYSRAVHGF SARLSPIQTA ALRRHPSVIS VIPDQAREI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.09691
Match: 2p4eP
Description: No description for 2p4eP was found.

Predicted Domain #2
Region A:
Residues: [110-777]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTTHTPAFLG FSQNSGLWSN SNYGEDVIVG VLDTGIWPEH PSFSDSGLGP IPSTWKGECE  60
   61 IGPDFPASSC NRKLIGARAF YRGYLTQRNG TKKHAAKESR SPRDTEGHGT HTASTAAGSV 120
  121 VANASLYQYA RGTATGMASK ARIAAYKICW TGGCYDSDIL AAMDQAVADG VHVISLSVGA 180
  181 SGSAPEYHTD SIAIGAFGAT RHGIVVSCSA GNSGPNPETA TNIAPWILTV GASTVDREFA 240
  241 ANAITGDGKV FTGTSLYAGE SLPDSQLSLV YSGDCGSRLC YPGKLNSSLV EGKIVLCDRG 300
  301 GNARVEKGSA VKLAGGAGMI LANTAESGEE LTADSHLVPA TMVGAKAGDQ IRDYIKTSDS 360
  361 PTAKISFLGT LIGPSPPSPR VAAFSSRGPN HLTPVILKPD VIAPGVNILA GWTGMVGPTD 420
  421 LDIDPRRVQF NIISGTSMSC PHVSGLAALL RKAHPDWSPA AIKSALVTTA YDVENSGEPI 480
  481 EDLATGKSSN SFIHGAGHVD PNKALNPGLV YDIEVKEYVA FLCAVGYEFP GILVFLQDPT 540
  541 LYDACETSKL RTAGDLNYPS FSVVFASTGE VVKYKRVVKN VGSNVDAVYE VGVKSPANVE 600
  601 IDVSPSKLAF SKEKSVLEYE VTFKSVVLGG GVGSVPGHEF GSIEWTDGEH VVKSPVAVQW 660
  661 GQGSVQSF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.30103
Match: 1xf1A
Description: Structure of C5a peptidase- a key virulence factor from Streptococcus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle