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View Structure Prediction Details

Protein: CDC22_ARATH
Organism: Arabidopsis thaliana
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC22_ARATH.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
472.0 [0..6] [445..1166]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS  60
   61 KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS LHQQPKSVKP RRYIPQTSER 120
  121 TLDA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.522879
Match: 2aq5A
Description: Crystal Structure of Murine Coronin-1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [125-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDIVDDFYLN LLDWGSANVL AIALDHTVYL WDASTGSTSE LVTIDEEKGP VTSINWAPDG  60
   61 RHVAVGLNNS EVQLWDSASN RQLRTLKGGH QSRVGSLAWN NHILTTGGMD GLIINNDVRI 120
  121 RSPIVETYRG HTQEVCGLKW SGSGQQLASG GNDNVVHIWD RSVASSNSTT QWLHRLEEHT 180
  181 SAVKALAWCP FQANLLATGG GGGDRTIKFW NTHTGACLNS VDTGSQVCSL LWSKNERELL 240
  241 SSHGFTQNQL TLWKYPSMVK MAELTGHTSR VLYMAQSPDG CTVASAAGDE TLRFWNVFGV 300
  301 PETAKKAAPK AVAEPFSHVN RIR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.0
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle