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View Structure Prediction Details

Protein: gi|9757929, gi|1...
Organism: Arabidopsis thaliana
Length: 342 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9757929, gi|1....

Description E-value Query
Range
Subject
Range
gi|10177081, gi|... - gi|15237918|ref|NP_197810.1| lipase class 3-related [Arabidopsis thaliana], gi|10177081|dbj|BAB10387...
405.0 [0..1] [332..16]
gi|115445589, gi... - gi|50906987|ref|XP_464982.1| lipase class 3-like [Oryza sativa (japonica cultivar-group)], gi|478477...
gi|218190502 - gi|218190502|gb|EEC72929.1| hypothetical protein OsI_06776 [Oryza sativa Indica Group]
394.0 [0..1] [336..1]

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Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRREIFSF SGPPPIPSFD WNNLYHRASL VSCLVQGVYT MERDRQQNRC GSDSKARPWW  60
   61 AFYRFTLYQQ LRDALDGSIY GAVFQNDINY QNTPNSIVPP RYIIALRGTI LSPQTMACDV 120
  121 QLNIRIAFEN LYRGGRFVQA IQAMQYFVAT YGNTAIWIAG HSLGAGLALL AGKIMAMYGC 180
  181 PVEAYIFNPP ISLIPLEQLV ESEDLKCAVR LARDILKAGI ARVLDLNEVS NLHNTYASWR 240
  241 PHLFVNQSDP IC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.522879
Match: 1uswA
Description: Crystal Structure of Ferulic Acid Esterase from Aspergillus niger
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [253-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEYIGYFNHR GDMNELQLGR IERLARYSIR RILFGGGESS SSYSSEEHLH FLPSAIVMVN  60
   61 TIISPDFQTD HGIHQWWNPM LGQFSYQIIA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle