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View Structure Prediction Details

Protein: gi|9757831, gi|8...
Organism: Arabidopsis thaliana
Length: 158 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9757831, gi|8....

Description E-value Query
Range
Subject
Range
YC20L_ARATH - Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2
144.0 [0..38] [158..70]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHSLSFIST NLNSLVLNHH QCQSFGTFVS SPFKRKRRFA RSIRALQETE GPTPRRLIDI  60
   61 IRSVPEISRN YFKKPSRRTL FGGISLLGGF YVAQTISLSF GA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.725 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.707 a.130.1 Chorismate mutase II
View Download 0.672 a.16.1 S15/NS1 RNA-binding domain
View Download 0.648 a.130.1 Chorismate mutase II
View Download 0.620 a.16.1 S15/NS1 RNA-binding domain

Predicted Domain #2
Region A:
Residues: [103-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGVNDVIAAV LCVLLTEYVT RFYYSRTTVT FPIALLNNFK MGFTYGLFID AFKLAS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.886057
Match: PF04483.3
Description: No description for PF04483.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle