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View Structure Prediction Details

Protein: gi|15234852, gi|...
Organism: Arabidopsis thaliana
Length: 335 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15234852, gi|....

Description E-value Query
Range
Subject
Range
gi|114616712, gi... - gi|114616716|ref|XP_001135742.1| PREDICTED: GTPase, IMAP family member 5 isoform 5 [Pan troglodytes]...
203.0 [0..1] [282..1]

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Predicted Domain #1
Region A:
Residues: [1-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGLVEVDV QTGQDACESD LPMKPSRTLV LIGCSGNGKS ATGNSILRSE AFKSKGQAAA  60
   61 VTKECELKST KRPNGQIINV IDTPGLFSLF PSNESTIREI LKCSHLAKEG IDAVLMVFSL 120
  121 RSRLTEEEKS VPFVLKTLFG DSIFDYLIVV FTNEDSLIDD NVTINEYLEG SPDFKEILAA 180
  181 CNNRMVLFEN RLRTSKRKKA KQVQKLLDLV EEVERKNNNK PFLFDLSHES MESEAVVDEK 240
  241 AKKIRAMKSN YTKQEMSNWK EEEVNSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.522879
Match: 2hjgA
Description: No description for 2hjgA was found.

Predicted Domain #2
Region A:
Residues: [268-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAKKVEKVIE TTSLLEQKLN QEQNARLEAE KRANKLHEES SEEIKILKEK LERAQKELEK  60
   61 RDQGCIIL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.221849
Match: 1dg3A
Description: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle