YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: TPS11_ARATH
Organism: Arabidopsis thaliana
Length: 862 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for TPS11_ARATH.

Predicted Domain #1
Region A:
Residues: [1-552]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPESWKDQL SLVSADDYRI MGRNRIPNAV TKLSGLETDD PNGGAWVTKP KRIVVSNQLP  60
   61 LRAHRDISSN KWCFEFDNDS LYLQLKDGFP PETEVVYVGS LNADVLPSEQ EDVSQFLLEK 120
  121 FQCVPTFLPS DLLNKYYHGF CKHYLWPIFH YLLPMTQAQG SLFDRSNWRA YTTVNKIFAD 180
  181 KIFEVLNPDD DYVWIHDYHL MILPTFLRNR FHRIKLGIFL HSPFPSSEIY RTLPVRDEIL 240
  241 KGFLNCDLVG FHTFDYARHF LSCCSRMLGL DYESKRGYIG LEYFGRTVSI KILPVGIHMG 300
  301 QIESIKASEK TAEKVKRLRE RFKGNIVMLG VDDLDMFKGI SLKFWAMGQL LEQNEELRGK 360
  361 VVLVQITNPA RSSGKDVQDV EKQINLIADE INSKFGRPGG YKPIVFINGP VSTLDKVAYY 420
  421 AISECVVVNA VRDGMNLVPY KYTVTRQGSP ALDAALGFGE DDVRKSVIIV SEFIGCSPSL 480
  481 SGAIRVNPWN IDAVTNAMSS AMTMSDKEKN LRHQKHHKYI SSHNVAYWAR SYDQDLQRAC 540
  541 KDHYNKRFWG VG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.0
Match: 1uqtA
Description: Trehalose-6-phosphate from E. coli bound with UDP-2-fluoro glucose.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [553-862]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGLFFKVVAL DPNFRRLCGE TIVPAYRRSS SRLILLDYDG TMMDQDTLDK RPSDDLISLL  60
   61 NRLCDDPSNL VFIVSGRGKD PLSKWFDSCP NLGISAEHGY FTRWNSNSPW ETSELPADLS 120
  121 WKKIAKPVMN HYMEATDGSF IEEKESAMVW HHQEADHSFG SWQAKELLDH LESVLTNEPV 180
  181 VVKRGQHIVE VKPQGVSKGK VVEHLIATMR NTKGKRPDFL LCIGDDRSDE DMFDSIVKHQ 240
  241 DVSSIGLEEV FACTVGQKPS KAKYYLDDTP SVIKMLEWLA SASDGSKHEQ QKKQSKFTFQ 300
  301 QPMGQCRKKA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.522879
Match: 1u02A
Description: Crystal structure of trehalose-6-phosphate phosphatase related protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle