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View Structure Prediction Details

Protein: gi|22136330, gi|...
Organism: Arabidopsis thaliana
Length: 281 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22136330, gi|....

Description E-value Query
Range
Subject
Range
gi|42545121, gi|... - gi|46111669|ref|XP_382892.1| hypothetical protein FG02716.1 [Gibberella zeae PH-1], gi|42545121|gb|E...
253.0 [0..20] [274..19]

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Predicted Domain #1
Region A:
Residues: [1-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRRLLSII STSLINSSFH QTAKPRFIIS SPLLQCRPSP ISTQIPTSTS RALSFQGIRA  60
   61 YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ KARGTMKFGF EGGQTPLRRR 120
  121 LPKRGFKNKF KLHFQPVGLG KIAKLINAGK IDSHELITMK TLKDVGAIGK QIEDGVRLMG 180
  181 RGADDIKWPL HFEVSRVTVR AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK 240
  241 AARPPPKQQD KVDSIGRLPA PKKPIPFFAA EETKVESPVE S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 1p85J
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural molecule activity 0.14874723010384 bayes_pls_golite062009
structural constituent of ribosome 0.13434652288249 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle