YRC Public Data Repository - Protein Structure Prediction

Protein:	RH32_ARATH
Organism:	Arabidopsis thaliana
Length:	739 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH32_ARATH.

Description	E-value	Query Range	Subject Range
gi\|78036960, gi\|... - gi\|78048530\|ref\|YP_364705.1\| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str....	393.0	[0..73]	[697..27]
gi\|21109105, gi\|... - gi\|21243540\|ref\|NP_643122.1\| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306],...	393.0	[0..73]	[697..11]
gi\|84623095, gi\|... - gi\|84623095\|ref\|YP_450467.1\| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018],... gi\|58425767, gi\|... - gi\|58581173\|ref\|YP_200189.1\| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331], g...	392.0	[0..73]	[697..11]
gi\|28056193, gi\|... - gi\|28198133\|ref\|NP_778447.1\| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1], gi\|28056193\|...	387.0	[0..64]	[673..8]
gi\|71898665, gi\|... - gi\|71898665\|ref\|ZP_00680835.1\| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-term...	385.0	[0..64]	[695..2]
gi\|71162812, gi\|... - gi\|71276350\|ref\|ZP_00652627.1\| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-term... gi\|71901364, gi\|... - gi\|71901364\|ref\|ZP_00683458.1\| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-term... gi\|170729445, gi... - gi\|170729445\|ref\|YP_001774878.1\| ATP-dependent RNA helicase [Xylella fastidiosa M12], gi\|167964238\|g...	385.0	[0..64]	[673..2]
gi\|160859221, gi... - gi\|160873699\|ref\|YP_001553015.1\| DEAD/DEAH box helicase domain-containing protein [Shewanella baltic...	384.0	[0..71]	[716..6]
gi\|9105065, gi\|1... - gi\|9105065\|gb\|AAF83065.1\|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c], gi\|158368... gi\|11360510 - pir\|\|G82830 ATP-dependent RNA helicase XF0252 [imported] - Xylella fastidiosa (strain 9a5c)	384.0	[0..64]	[638..8]
gi\|146865366, gi... - gi\|217971789\|ref\|YP_002356540.1\| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223], g... gi\|68521673, gi\|... - gi\|68540454\|ref\|ZP_00580205.1\| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-term... gi\|151363720, gi... - gi\|152999102\|ref\|YP_001364783.1\| DEAD/DEAH box helicase domain-containing protein [Shewanella baltic...	383.0	[0..71]	[716..6]
gi\|84381031, gi\|... - gi\|84498694\|ref\|ZP_00997447.1\| ATP-dependent RNA helicase [Janibacter sp. HTCC2649], gi\|84381031\|gb\|...	383.0	[0..54]	[659..4]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN  60
   61 GTVFSRYAGV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.422	a.56.1	CO dehydrogenase ISP C-domain like
View	Download	0.401	d.68.3	SirA-like
View	Download	0.401	d.68.3	SirA-like
View	Download	0.380	a.60.2	RuvA domain 2-like
View	Download	0.375	a.60.2	RuvA domain 2-like
View	Download	0.370	a.56.1	CO dehydrogenase ISP C-domain like
View	Download	0.320	a.218.1	Description not found.
View	Download	0.297	a.60.2	RuvA domain 2-like
View	Download	0.268	a.6.1	Putative DNA-binding domain
View	Download	0.266	a.57.1	Protein HNS-dependent expression A; HdeA

Predicted Domain #2

Region A:
Residues: [71-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKFAQLPISD KTKRGLKDAK YVDMTDVQSA AIPHALCGRD ILGAARTGSG KTLAFVIPIL  60
   61 EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER 120
  121 VHEMNILVCA PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR 180
  181 QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	2pl3A
Description:	No description for 2pl3A was found.

Predicted Domain #3

Region A:
Residues: [288-444]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTSLMQTVMI VPVEKKLDML WSFIKTHLNS RILVFLSTKK QVKFVHEAFN KLRPGIPLKS  60
   61 LHGKMSQEKR MGVYSQFIER QSVLFCTDVL ARGLDFDKAV DWVVQVDCPE DVASYIHRVG 120
  121 RTARFYTQGK SLLFLTPSEE KMIEKLQEAK VPIKLIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	2hjvA
Description:	No description for 2hjvA was found.

Predicted Domain #4

Region A:
Residues: [445-495]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANNQKLQEVS RLLAALLVKY PDLQGVAQRA FITYLRSIHK RRDKEIFDVS K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.622	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.622	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.594	a.4.1	Homeodomain-like
View	Download	0.594	a.4.1	Homeodomain-like
View	Download	0.589	a.4.1	Homeodomain-like
View	Download	0.545	a.4.1	Homeodomain-like
View	Download	0.506	a.55.1	IHF-like DNA-binding proteins
View	Download	0.506	a.55.1	IHF-like DNA-binding proteins
View	Download	0.505	a.22.1	Histone-fold
View	Download	0.505	a.22.1	Histone-fold
View	Download	0.417	a.4.1	Homeodomain-like
View	Download	0.369	a.159.4	Description not found.
View	Download	0.297	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.292	f.30.1	Photosystem I reaction center subunit X, PsaK
View	Download	0.233	a.4.1	Homeodomain-like

Predicted Domain #5

Region A:
Residues: [496-739]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSIENFSASL GLPMTPRIRF TNLKTKKKGV YESSIAMEIE NAQEYEAPLV VKKDLLGEDL  60
   61 EEEDFALKPR KEGKVVEKST KEEEVLIPGN RVLKNKKLKI NLHRPFGSRV VLDEEGNSLA 120
  121 PLASVAAEAG TEVALDEERM NDYYKKVGAE MRKADIEDKK VDKERRREKR MKQKIKRKRG 180
  181 AMEDEEEEEE EDHDGSGSSD DETGRNSKRA KKIVSDNEEN GGKINTDSLS VADLEEMALK 240
  241 FITQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits