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View Structure Prediction Details

Protein: HMOX4_ARATH
Organism: Arabidopsis thaliana
Length: 283 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMOX4_ARATH.

Description E-value Query
Range
Subject
Range
HMOX3_ARATH - Heme oxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=HO3 PE=1 SV=1
377.0 [0..1] [283..1]
gi|14485575 - gi|14485575|gb|AAK63012.1|AF320028_1 heme oxygenase 1 [Lycopersicon esculentum]
310.0 [0..48] [283..42]
gi|14485569 - gi|14485569|gb|AAK63009.1|AF320025_1 heme oxygenase 3 [Glycine max]
301.0 [0..47] [283..11]
gi|14485579 - gi|14485579|gb|AAK63014.1|AF320030_1 heme oxygenase 1 [Pinus taeda]
298.0 [0..49] [283..82]
gi|15076865, gi|... - gi|15076867|gb|AAK82971.1|AF276230_1 putative heme oxygenase 1 precursor [Pisum sativum], gi|1507686...
298.0 [0..42] [283..40]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSRLNASC RFPASRRLDC ESYVSLRAKT VTIRYVRTIA APRRHLVRRA NEDQTLVVNV  60
   61 VAAAGEKPER R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [72-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPREPNGFVE EMRFVVMKIH PRDQVKEGKS DSNDLVSTWN FTIEGYLKFL VDSKLVFETL  60
   61 ERIINESAIQ AYAGLKNTGL ERAENLSRDL EWFKEQGYEI PESMVPGKAY SQYLKNIAEK 120
  121 DPPAFICHFY NINFAHSAGG RMIGTKVAEK ILDNKELEFY KWDGQLSELL QNVSEELNKV 180
  181 AELWTREEKN HCLEETEKSF KFYWEIFRYL LS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.154902
Match: 1dveA
Description: Heme oxygenase-1 (HO-1)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle