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View Structure Prediction Details

Protein: gi|6729515, gi|1...
Organism: Arabidopsis thaliana
Length: 642 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6729515, gi|1....

Description E-value Query
Range
Subject
Range
gi|74002828 - gi|74002828|ref|XP_858944.1| PREDICTED: similar to Serine/threonine-protein kinase PAK 2 (p21-activa...
289.0 [0..66] [602..8]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSDKIVESS HRKHRRSYSP SDEVVKSSKR HKHHHHKHRH SHHLDEDGNE KNVYPFLGNP  60
   61 GNDGELDLEE GENLKKKGSI DRESNRDNYR GRSSRDKARS SSRETGRENE RERRKDQDRD 120
  121 RGRREDQSDQ EIY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 2fsdA
Description: No description for 2fsdA was found.

Predicted Domain #2
Region A:
Residues: [134-577]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSGGDGYGEV RHDAEDDLDS LKSHKPNGET QGNVERSEVD NDDDGEDVVW GVEEQEAAEM  60
   61 KRIEESKRIT QAILEKYKKK LEQSSTVADV QAKAGLDTEA VDGEVAKLSS AVGETPARLV 120
  121 ISDSDMTLAS AGSPKSDMFS DDIFGESPLA DGTRKGNALV PFVRSGLNDN WDDAEGYYSY 180
  181 QLGELLDDRY EIMATHGKGV FSTVVRAKDT KPELGEPEEV AIKIIRKNET MHKAGQAEIR 240
  241 ILKKLVCSDP ENKHHCVRLL STFEYRNHLC LVFESLHLNL REVVKKIGVN IGLKLYDVRV 300
  301 YAEQLFISLK HLKNCGVLHC DIKPDNILMN EGRNMLKLCD FGSAMFAGEN QVTPYLVSRF 360
  361 YRAPEIILGL PYDHPLDIWS VGCCLYELYS GKIMFPGSTN NDMLRLHMEL KGPFPKKMLR 420
  421 KGAFIDQHFD KDLCFYATEE DSVT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.30103
Match: 1qcfA
Description: Hemapoetic cell kinase Hck; Hemopoetic cell kinase Hck; Haemopoetic cell kinase Hck
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [578-642]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKTIRRIMVN VKPKDLGSVI RRRYEDEDPK VLVHFRNLLD KIFTLDPQKR LTVSQALAHP  60
   61 FITGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.154902
Match: 2exeA
Description: Crystal structure of the phosphorylated CLK3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle