| Protein: | PTBP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 399 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTBP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
233.0 | [0..5] | [399..87] |
|
Region A: Residues: [1-203] |
1 11 21 31 41 51
| | | | | |
1 MSSSGQTQFR YTQTPSKVVH LRNLPWECVE EELIDLCKRF GKIVNTKSNV GANRNQAFVE 60
61 FADLNQAISM VSYYASSSEP AQIRGKTVYI QYSNRHEIVN NQSPGDVPGN VLLVTFEGVE 120
121 SHEVSIDVIH LVFSAFGFVH KIATFEKAAG FQALVQFTDV ETASAARSAL DGRSIPRYLL 180
181 SAHVGSCSLR MSYSAHTDLN IKF
|
| Detection Method: |  |
| Confidence: | 5.8 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787118623292657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
|
Region A: Residues: [204-399] |
1 11 21 31 41 51
| | | | | |
1 QSHRSRDYTN PYLPVNQTAM DGSMQPALGA DGKKVESQSN VLLGLIENMQ YAVTVDVLHT 60
61 VFSAYGTVQK IAIFEKNGST QALIQYSDIP TAAMAKEALE GHCIYDGGYC KLRLSYSRHT 120
121 DLNVKAFSDK SRDYTLPDLS LLVAQKGPAV SGSAPPAGWQ NPQAQSQYSG YGGSPYMYPS 180
181 SDPNGASPSG QPPYYG
|
| Detection Method: | |
| Confidence: | 8.522879 |
| Match: | 1sjrA |
| Description: | NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
