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View Structure Prediction Details

Protein: gi|22135769, gi|...
Organism: Arabidopsis thaliana
Length: 366 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22135769, gi|....

Description E-value Query
Range
Subject
Range
gi|86134306, gi|... - gi|86134306|ref|ZP_01052888.1| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi|85821169|gb|...
292.0 [0..30] [364..10]

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Predicted Domain #1
Region A:
Residues: [1-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVMRSLRGN SGAGLVFRPA RLNSLRSVFT GCRAVILPRF GGPEVFELRE NVPVPNLNPN  60
   61 EVLVKAKAVS VNPLDCRIRA GYGRSVFQPH LPIIVGRDVS GEVAAIGTSV KSLKVGQEVF 120
  121 GALHPTALRG TYTDYGILSE DELTEKPSSI SHVEASAIPF AALTAWRALK SNARITEGQR 180
  181 LLVFGGGGAV GFSAIQLAVA SGCHVTASCV GQTKDRILAA GAEQAVDYTT EDIELAVKGK 240
  241 FDAVLDTIGG PETERIGINF LRKGGNYMTL QGEAASLTDK YGFVVGLPLA TSLLMKKKIQ 300
  301 YQYSHGIDYW WTYMRADPEG LAEIQRLVGA GKLKIPVEKT FPITDVVAAH EAKEKKQIPG 360
  361 KVVLEF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.30103
Match: 1yb5A
Description: Crystal structure of human Zeta-Crystallin with bound NADP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 4.14217990101505 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 2.27417613545298 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 2.0836009784049 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity 1.68027744358887 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 1.22416351603098 bayes_pls_golite062009
chaperone binding 1.04678886151518 bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent 0.839863523675468 bayes_pls_golite062009
transporter activity 0.793769336118517 bayes_pls_golite062009
transmembrane transporter activity 0.635891484075352 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 0.576163737662951 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 0.51503848775098 bayes_pls_golite062009
binding 0.405786564527334 bayes_pls_golite062009
substrate-specific transporter activity 0.300373102236296 bayes_pls_golite062009
active transmembrane transporter activity 0.239024094835991 bayes_pls_golite062009
nucleic acid binding 0.204320937203153 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.165260811069909 bayes_pls_golite062009
ion transmembrane transporter activity 0.0257250793986203 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle