| Protein: | gi|15230522, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 1253 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15230522, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
534.0 | [0..2] | [1207..15] |
|
Region A: Residues: [1-155] |
1 11 21 31 41 51
| | | | | |
1 MVDCSDVYIS FDRSEDTVRY SFVSHLCAAF RRRGISSFIR ENGSDSESNG FSKLETSRAS 60
61 VVVFSEKYSS SKSCMEELVK VSERRRKNCL AVVPVFYPVT KSFMKKQIWN LGDVRSDWPS 120
121 ALLETVDLPG HELYDTQSDS DFVEEIVADV REKLN
|
| Detection Method: |  |
| Confidence: | 3.81 |
| Match: | 1fyvA |
| Description: | Toll-like receptor 1, TLR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.166909062418251 | bayes_pls_golite062009 |
|
Region A: Residues: [156-563] |
1 11 21 31 41 51
| | | | | |
1 MSDNIGIYSK LGKIETLIYK QPWGVRSIGI WGMPGIGKTT LAKAAFDQLS GDYEASCFIK 60
61 DFNKAFHEKG LYGLLEAHFG KILREELGIK SSITRPILLR NVLRHKRVLV VLDDVCKPLD 120
121 AESFLGGFDW FCPGSLIIIT SRDKQVFSIC RVDQIYEVPG LNEEEALQLF SRCAFGKEII 180
181 HESLQKLSKK VIDYANGNPL ALIFFGCMSR KNPKPIEIAF PKVKKYLAHE IHDAVKSTYD 240
241 SLSSNEKNIF LDIACLFRGE NVDCVIHLLE GCGFFPRVEI NVLVEKCLVS MAEGRVVMHN 300
301 LIQSIGRKII NGGKRRSRLW KPLIIKYFLE DRQVLGSEDI EAIFLDPSAL SFDVNPMAFE 360
361 NMYNLRYLKI CSSNPGNHYA LHLPKGVKSL PEELRLLHWE HFPLLSLP
|
| Detection Method: | |
| Confidence: | 7.69897 |
| Match: | 1z6tA |
| Description: | Structure of the apoptotic protease-activating factor 1 bound to ADP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [564-1132] |
1 11 21 31 41 51
| | | | | |
1 QDFNTRNLVI LNMCYSKLQR LWEGTKELGM LKRIMLCHSQ QLVGIQELQI ALNMEVIDLQ 60
61 GCARLQRFLA TGHFQHLRVI NLSGCIKIKS FPEVPPNIEE LYLKQTGIRS IPTVTFSPQD 120
121 NSFIYDHKDH KFLNREVSSD SQSLSIMVYL DNLKVLDLSQ CLELEDIQGI PKNLRKLYLG 180
181 GTAIKELPSL MHLSELVVLD LENCKRLHKL PMGIGNLSSL AVLNLSGCSE LEDIQGIPRN 240
241 LEELYLAGTA IQEVTSLIKH LSELVVLDLQ NCKRLQHLPM EISNLKSLVT LKLTDPSGMS 300
301 IREVSTSIIQ NGISEIGISN LNYLLLTFNE NAEQRREYLP RPRLPSSSLH GLVPRFYALV 360
361 SLSLFNASLM HIPEEICSLP SVVLLDLGRN GFSKIPESIK QLSKLHSLRL RHCRNLILLP 420
421 ALPQSLKLLN VHGCVSLESV SWGFEQFPSH YTFSDCFNKS PKVARKRVVK GLAKVASIGN 480
481 EHQQELIKAL AFSICGPAGA DQATSYNLRA GSFATIEITP SLRKTLLGFA IFVVVSFSDD 540
541 SHNNAGLGVR CVSRWKTKKR VVTGKAEKV
|
| Detection Method: | |
| Confidence: | 27.69897 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1133-1253] |
1 11 21 31 41 51
| | | | | |
1 FRCWAPREAP EVQRDHMFVF YEDAEMHRGG GEGNKPNIMA DHVEFEFQAV NGRNKVLGGN 60
61 CMVTECDVCV ITAATGAASL SVTNASKDMS LSKNHSPKLS SVIGKLRFKR VGRFGGCVCL 120
121 E
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
