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View Structure Prediction Details

Protein: C3H38_ARATH
Organism: Arabidopsis thaliana
Length: 676 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C3H38_ARATH.

Description E-value Query
Range
Subject
Range
gi|114645167 - gi|114645167|ref|XP_509017.2| PREDICTED: splicing factor, arginine/serine-rich 2, interacting protei...
455.0 [0..12] [676..799]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMSGLGRKR VSKWDSKEDT HHHHSSVNAN SASYYRDKES EPVRFNAESN GEARTRSRVS  60
   61 QNNDNSYFSE QDGTRQQFVR RSGSRSNSRS RSRSRSPVYR ARRDAGSYDR HKTRTQVSPT 120
  121 PIREFNK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [128-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGSDHLFDQS RSDHYGWEDN IRKPRETKYH TDDFREEAMM EGARSSDYNN TDYPEDNSRI  60
   61 RRRRSEFTGE KETQRRDGGD GEGGFHRSSN IPCKFFAAGT GFCRNGKYCR FSHHVADRKQ 120
  121 PQDNNNNFYR QDNNNHTSGH NKWNDVERLD NGRVGGIEVS RASKKGV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [295-514]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SESKGNGSSS WIDDMEMSPD WNYGVQALKK PVKEDHSVGI IGQSSQSRVL KDDQRSSGMF  60
   61 SHGGRTMAEK PVAASHQSYS NSVNVAPVET FNQNHNALPY QSSLTAGGSQ QVLAAAATNF 120
  121 SVGSNLSNLE SGKVYQDNHH STVEKPVLVQ NTVSREQIDQ ITNISASLAQ FLANGQPIPQ 180
  181 LEQALQLPLH SESVQPNQAT TQSNVVSSNP NQLWGLGMST 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [515-676]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAEGVPAVTA SKISNVEEIQ EVSLDPKENG DKKTDEASKE EEGKKTGEDT NDAENVVDED  60
   61 EDGDDDGSDE ENKKEKDPKG MRAFKFALVE VVKELLKPAW KEGKLNKDGY KNIVKKVAEK 120
  121 VTGTMQSGNV PQTQEKIDHY LSASKPKLTK LVQAYVGKIK KT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle