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View Structure Prediction Details

Protein: CI111_ARATH
Organism: Arabidopsis thaliana
Length: 1022 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CI111_ARATH.

Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKKKQSRT PSRLSNSEPP ASPRTPASST TSRDTDSINE EELRRSIEEA SAAFPCLLGK  60
   61 SAIIARVADV ASESIRGSKI WLSETSMVAA S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSPGSTVSVS LASPESRFSR SFPLSSIKAE YGDDSESIIA DEPGNYFVLT TVFSSSKVFK  60
   61 DAVRISLNLC YGLGCPVSGR TVFVYPVSGP SLSDQFNGNG RSRYDDVNHL SLLACKELCL 120
  121 ELTPFRNMLQ AKNAFESSYE QNGNGNSTPK TPANLQKFSS PRPKSPVSPI IEDSVFSCKQ 180
  181 RFSSESSIDL REVLSNESSK KLLQICASSW LYPCSLLYGN FVSVPILSEI CIFCVKRADK 240
  241 RPSDTSNRNH AFMINQETKV YLHHTLDLAS EIQGRTFVQG LQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 109.0
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [374-676]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDEGENVGCE ISKLGGLSKE YAILRDIIDS SSIKNSLSSL GLRPTKGVLI HGPPGTGKTS  60
   61 LARTFARHSG VNFFSVNGPE IISQYLGESE KALDEVFRSA SNATPAVVFI DDLDAIAPAR 120
  121 KEGGEELSQR MVATLLNLMD GISRTDGVVV IAATNRPDSI EPALRRPGRL DREIEIGVPS 180
  181 STQRSDILHI ILRGMRHSLS NIQVEQLAMA THGFVGADLS ALCCEAAFVC LRRHLDQSSS 240
  241 SSNLPLEEAP IAESSSNMSD ISSDSSDSAS SCITISATTS GAQRSFSLDE TVSLVADDIQ 300
  301 NNG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.69897
Match: 2zamA
Description: No description for 2zamA was found.

Predicted Domain #4
Region A:
Residues: [677-1022]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSCSEQMLRK QGEHTLSVGF EDFENAKTKI RPSAMREVIL EVPKVNWEDV GGQNEVKNQL  60
   61 MEAVEWPQKH QDAFKRIGTR PPSGILMFGP PGCSKTLMAR AVASEAKLNF LAVKGPELFS 120
  121 KWVGESEKAV RSLFAKARAN APSIIFFDEI DSLASIRGKE NDGVSVSDRV MSQLLVELDG 180
  181 LHQRVGVTVI AATNRPDKID SALLRPGRFD RLLYVGPPNE TDREAILKIH LRKIPCSSDI 240
  241 CLKELASITK GYTGADISLI CREAAIAALE ESLEMEEISM RHLKAAISQI EPTEILSYKA 300
  301 LSEKFQRLVH TDPQREEEVT QPGNKSRSLW TPLRSVAMFL RRHIAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.09691
Match: 2ce7A
Description: EDTA treated
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle