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View Structure Prediction Details

Protein: GGPP6_ARATH
Organism: Arabidopsis thaliana
Length: 336 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGPP6_ARATH.

Description E-value Query
Range
Subject
Range
gi|58201026 - gi|58201026|gb|AAW66658.1| geranyl diphosphate synthase [Picrorhiza kurrooa]
325.0 [0..5] [336..53]

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Predicted Domain #1
Region A:
Residues: [1-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPRYSLILS AMRLIRPSNR RLSSIASSDS EFISYMKNKA KSINKALDNS IPLCNNFVPL  60
   61 WEPVLEVHKA MRYTLLPGGK RVRPMLCLVA CELVGGQEST AMPAACAVEM IHAASLILDD 120
  121 LPCMDDDSLR RGKPTNHKVF GEKTSILASN ALRSLAVKQT LASTSLGVTS ERVLRAVQEM 180
  181 ARAVGTEGLV AGQAADLAGE RMSFKNEDDE LRYLELMHVH KTAVLVEAAA VVGAIMGGGS 240
  241 DEEIERLKSY ARCVGLMFQV MDDVLDETKS SEELGKTAGK DLITGKLTYP KVMGVDNARE 300
  301 YAKRLNREAQ EHLQGFDSDK VVPLLSLADY IVKRQN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.69897
Match: 2j1pA
Description: No description for 2j1pA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle