YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16604561, gi\|...
Organism:	Arabidopsis thaliana
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16604561, gi|....

Description	E-value	Query Range	Subject Range
gi\|62642770, gi\|... - gi\|86129704\|gb\|ABC86561.1\| TGF beta-inducible nuclear protein [Rattus norvegicus], gi\|62642770\|ref\|X... NSA2_MOUSE - Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Nsa2 PE=2 SV=1	454.0	[0..1]	[260..1]
gi\|68534732 - gi\|68534732\|gb\|AAH98657.1\| Cdk105 protein [Rattus norvegicus]	453.0	[0..1]	[260..1]
gi\|73949746 - gi\|73949746\|ref\|XP_850805.1\| PREDICTED: similar to TGF beta-inducible nuclear protein 1 (L-name rela... NSA2_BOVIN - Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=NSA2 PE=2 SV=1 gi\|149726539 - gi\|149726539\|ref\|XP_001504729.1\| PREDICTED: similar to TGF beta-inducible nuclear protein 1 [Equus c...	452.0	[0..1]	[260..1]
gi\|134025771, gi... - gi\|89272759\|emb\|CAJ83866.1\| TGF beta-inducible nuclear protein 1 [Xenopus tropicalis], gi\|62859971\|r...	452.0	[0..1]	[260..1]
ENSCJAT00000032828 - null NSA2 - NSA2 ribosome biogenesis homolog (S. cerevisiae) gi\|114599686 - gi\|114599686\|ref\|XP_517704.2\| PREDICTED: hypothetical protein [Pan troglodytes]	451.0	[0..1]	[260..1]
gi\|109077600, gi... - gi\|109077602\|ref\|XP_001103534.1\| PREDICTED: TGF beta-inducible nuclear protein 1 isoform 2 [Macaca m...	450.0	[0..1]	[260..1]
gi\|49118803 - gi\|49118803\|gb\|AAH73255.1\| Unknown (protein for MGC:80606) [Xenopus laevis]	450.0	[0..1]	[260..1]
gi\|41054639, gi\|... - gi\|41054639\|ref\|NP_955862.1\| TGF beta-inducible nuclear protein 1 [Danio rerio], gi\|28278483\|gb\|AAH4...	448.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQGDYIDLH RKRNGYRLDH FERKRKKEAR EVHKHSTMAQ KSLGIKGKMI AKKNYAEKAL  60
   61 MKKTLKMHEE SSSRRKADEN VQEGAVPAYL LDREDTTRAK VLSNTIKQKR KEKAGKWEVP 120
  121 LPKVRPVAED EMFRVIRS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.524	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.450	N/A	N/A	f.19.1	Aquaporin-like
View	Download	0.442	N/A	N/A	d.20.1	UBC-like
View	Download	0.404	N/A	N/A	f.57.1	Description not found.
View	Download	0.402	N/A	N/A	a.278.1	Description not found.
View	Download	0.394	N/A	N/A	f.14.1	Voltage-gated potassium channels
View	Download	0.394	N/A	N/A	f.14.1	Voltage-gated potassium channels
View	Download	0.304	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.282	N/A	N/A	a.1.1	Globin-like

Predicted Domain #2

Region A:
Residues: [139-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKRKTKQWKR MVTKATFVGP AFTRKPPKYE RFIRPSGLRF TKAHVTHPEL KCTFCLEIIG  60
   61 IKKNPNGPMY TSLGVMTRGT IIEVNVSELG LVTPAGKVVW GKYAQVTNNP ENDGCINAVL 120
  121 LV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.245	N/A	N/A	d.87.1	FAD/NAD-linked reductases, dimerisation (C-terminal) domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits