YRC Public Data Repository - Protein Structure Prediction

Protein:	CKS2_ARATH
Organism:	Arabidopsis thaliana
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKS2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|109505505 - gi\|109505505\|ref\|XP_001054024.1\| PREDICTED: similar to CDC28 protein kinase regulatory subunit 2 [Ra...	142.0	[0..3]	[76..103]
gi\|118489795 - gi\|118489795\|gb\|ABK96697.1\| unknown [Populus trichocarpa x Populus deltoides] gi\|224118450, gi... - gi\|224118450\|ref\|XP_002331485.1\| regulatory subunit of cyclin-dependent kinase [Populus trichocarpa]... gi\|27435806 - gi\|27435806\|gb\|AAO13226.1\|AF149014_1 CKS1 protein [Populus tremula x Populus tremuloides]	140.0	[0..1]	[83..1]
gi\|45935118 - gi\|45935118\|gb\|AAS79576.1\| putative CDK regulatory subunit [Ipomoea trifida]	137.0	[0..1]	[73..1]
CKS1_CAEBR - Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis briggsae GN=cks-1 PE=3 SV=1 gi\|157772581 - gi\|157772581\|ref\|XP_001664355.1\| hypothetical protein CBG15632 [Caenorhabditis briggsae AF16]	137.0	[0..2]	[76..6]
cks-1 - cyclin-dependent kinase regulatory subunit status:Confirmed UniProt:Q17868 protein_id:AAF99866.1	137.0	[0..2]	[76..6]
CKS1_ORYSJ - Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN=CKS1 PE=2 SV=1 CKS1_ORYSI - Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica GN=CKS1 PE=2 SV=1	135.0	[0..1]	[73..1]
gi\|255628843, gi... - gi\|42362268\|gb\|AAS13367.1\| cyclin-dependent kinases regulatory subunit [Glycine max], gi\|255628843\|g...	135.0	[0..1]	[73..1]
gi\|40641585 - gi\|40641585\|emb\|CAE54272.1\| putative cyclin-dependent kinase regulatory subunit [Triticum aestivum]	134.0	[0..1]	[73..1]
gi\|108879113, gi... - gi\|157109134\|ref\|XP_001650539.1\| cyclin-dependent kinases regulatory subunit. putative [Aedes aegypt...	133.0	[0..2]	[76..4]
gi\|154343611\|ref... - cyclin-dependent kinase regulatory subunit [Leishmania braziliensis MHOM/BR/75/M2904] gi\|146097182 - gi\|146097182\|ref\|XP_001468066.1\| cyclin-dependent kinase regulatory subunit [Leishmania infantum JPC... gi\|134065083, gi... - gi\|154343611\|ref\|XP_001567751.1\| cyclin-dependent kinase regulatory subunit [Leishmania braziliensis... gi\|134072432 - gi\|134072432\|emb\|CAM71142.1\| cyclin-dependent kinase regulatory subunit [Leishmania infantum] gi\|68128777 - gi\|68128777\|emb\|CAJ08910.1\| cyclin-dependent kinase regulatory subunit [Leishmania major] gi\|157874443 - gi\|157874443\|ref\|XP_001685705.1\| cyclin-dependent kinase regulatory subunit [Leishmania major]	133.0	[0..3]	[72..30]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP  60
   61 EPHIMLFRRP LNYQQEHQAQ IAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	1qb3A
Description:	cks1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits