YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GGLO6_ARATH
Organism: Arabidopsis thaliana
Length: 603 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGLO6_ARATH.

Description E-value Query
Range
Subject
Range
GGLO5_ARATH - L-gulonolactone oxidase 5 OS=Arabidopsis thaliana GN=GULLO5 PE=1 SV=1
440.0 [0..1] [592..1]

Back

Predicted Domain #1
Region A:
Residues: [1-603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTSSPSYG SLNAAFWRTI FVVHCISTLV FTTISTPPED PVKCVSGNTN CTVTNSYGAF  60
   61 PDRSTCRAAN VAYPTTEAEL ISVVAAATKA GRKMRVTTRY SHSITKLACT DGTDGLLIST 120
  121 KFLNHTVRTD ATAMTLTVES GVTLRQLIAE AAKVGLALPY APYWWGLTVG GMMGTGAHGS 180
  181 SLWGKGSAVH DYVTEIRIVS PGSVNDGFAK VRVLRETTTP KEFNAAKVSL GVLGVISQVT 240
  241 LKLQPMFKRS LRYVMRNDSD FGDQAVTFGM KHEFADFIWL PSQGKVVYRM DDRVAVNTSG 300
  301 NGLLDFMPFR SQLSAALAII RSSEETQERF RDANGKCAGA TLITSTLFAT SYGLTNNGMI 360
  361 FTGYPVIGSQ NRMMSSGSCL DSLHDGLITA CPWDSRIKSE FFHQTTFSIP LTQVKSFIND 420
  421 IKSLVKIESK SLCVLELYDG ILMRYVTSSP AYLGKETEAL DFDLTYYRAK DPLSPRLYED 480
  481 FIEEIEQIAL FKYNALPHWG KNRNLAFDGV IKKYKNVPAF LKVKESYDPM GLFSSEWTDQ 540
  541 ILGIKGNVTI IKDGCALEGL CVCSEDAHCA PTKGYFCRPG KVYKEARVCT RADDISVIQS 600
  601 LSY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.09691
Match: 1wveA
Description: p-Cresol Methylhydroxylase: Alteration of the Structure of the Flavoprotein Subunit upon its Binding to the Cytochrome Subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
NAD or NADH binding 1.04610348406004 bayes_pls_golite062009
oxidoreductase activity 0.855636903130687 bayes_pls_golite062009
catalytic activity 0.840929189052895 bayes_pls_golite062009
cofactor binding 0.0633817105610104 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 0.016501492839311 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle