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View Structure Prediction Details

Protein: CLPB3_ARATH
Organism: Arabidopsis thaliana
Length: 968 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CLPB3_ARATH.

Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD  60
   61 HRPFVVRCEA SSSNGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.0
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [77-968]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTQQEFTEMA WQSIVSSPDV AKENKQQIVE TEHLMKALLE QKNGLARRIF SKIGVDNTKV  60
   61 LEATEKFIQR QPKVYGDAAG SMLGRDLEAL FQRARQFKKD LKDSYVSVEH LVLAFADDKR 120
  121 FGKQLFKDFQ ISERSLKSAI ESIRGKQSVI DQDPEGKYEA LEKYGKDLTA MAREGKLDPV 180
  181 IGRDDEIRRC IQILSRRTKN NPVLIGEPGV GKTAISEGLA QRIVQGDVPQ ALMNRKLISL 240
  241 DMGALIAGAK YRGEFEDRLK AVLKEVTDSE GQIILFIDEI HTVVGAGATN GAMDAGNLLK 300
  301 PMLGRGELRC IGATTLDEYR KYIEKDPALE RRFQQVYVDQ PTVEDTISIL RGLRERYELH 360
  361 HGVRISDSAL VEAAILSDRY ISGRFLPDKA IDLVDEAAAK LKMEITSKPT ALDELDRSVI 420
  421 KLEMERLSLT NDTDKASRER LNRIETELVL LKEKQAELTE QWEHERSVMS RLQSIKEEID 480
  481 RVNLEIQQAE REYDLNRAAE LKYGSLNSLQ RQLNEAEKEL NEYLSSGKSM FREEVLGSDI 540
  541 AEIVSKWTGI PVSKLQQSER DKLLHLEEEL HKRVVGQNPA VTAVAEAIQR SRAGLSDPGR 600
  601 PIASFMFMGP TGVGKTELAK ALASYMFNTE EALVRIDMSE YMEKHAVSRL IGAPPGYVGY 660
  661 EEGGQLTETV RRRPYSVILF DEIEKAHGDV FNVFLQILDD GRVTDSQGRT VSFTNTVIIM 720
  721 TSNVGSQFIL NNTDDDANEL SYETIKERVM NAARSIFRPE FMNRVDEYIV FKPLDREQIN 780
  781 RIVRLQLARV QKRIADRKMK INITDAAVDL LGSLGYDPNY GARPVKRVIQ QNIENELAKG 840
  841 ILRGDFKEED GILIDTEVTA FSNGQLPQQK LTFKKIESET ADAEQEEAAF SK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1qvrA
Description: Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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