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View Structure Prediction Details

Protein: RBOHC_ARATH
Organism: Arabidopsis thaliana
Length: 905 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for RBOHC_ARATH.

Predicted Domain #1
Region A:
Residues: [1-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVSFEVSG GYHSDAEAGN SGPMSGGQLP PIYKKPGNSR FTAENSQRTR TAPYVDLTVD  60
   61 VQDDTVSVHS LKMEGGSSVE ESPELTLLKR NRLEKKTTVV KRLASVSHEL KRLTSVSGGI 120
  121 GGRKPPRPAK LDRTKSAASQ ALKGLKFISK TDGGAGWSAV EKRFNQITAT TGGLLLRTKF 180
  181 GECIGMTSKD FALELFDALA RRRNITGEVI DGDQLKEFWE QINDQSFDSR LKTFFDMVDK 240
  241 DADGRLTEDE VREIISLSAS ANNLST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1qxpA
Description: Crystal Structure of a mu-like calpain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [267-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQKRADEYAA LIMEELDPDN IGYIMLESLE TLLLQAATQS VITSTGERKN LSHMMSQRLK  60
   61 PTFNRNPLKR WYRGLRFFLL DNWQRCWVIV LWFIVMAILF TYKYIQYRRS PVYPVMGDCV 120
  121 CMAKGAAETV KLNMALILLP VCRNTITWLR NKTRLGRVVP FDDNLNFHKV I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [438-842]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVGIIVGVTM HAGAHLACDF PRLLHATPEA YRPLRQFFGD EQPKSYWHFV NSVEGITGLV  60
   61 MVLLMAIAFT LATPWFRRGK LNYLPGPLKK LASFNAFWYT HHLFVIVYIL LVAHGYYLYL 120
  121 TRDWHNKTTW MYLVVPVVLY ACERLIRAFR SSIKAVTIRK VAVYPGNVLA IHLSRPQNFK 180
  181 YKSGQYMFVN CAAVSPFEWH PFSITSAPQD DYLSVHIRVL GDWTRALKGV FSEVCKPPPA 240
  241 GVSGLLRADM LHGANNPDFP KVLIDGPYGA PAQDYKKYEV VLLVGLGIGA TPMISIVKDI 300
  301 VNNIKAKEQA QLNRMENGTS EPQRSKKESF RTRRAYFYWV TREQGSFDWF KNIMNEVAER 360
  361 DANRVIEMHN YCTSVYEEGD ARSALIHMLQ SLNHAKNGVD IVSGT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.39794
Match: 1cqxA
Description: Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [843-905]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVMSHFAKPN WRNVYKRIAM DHPNTKVGVF YCGAPALTKE LRHLALDFTH KTSTRFSFHK  60
   61 ENF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.045757
Match: 3crzA
Description: No description for 3crzA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle