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View Structure Prediction Details

Protein: ROGF8_ARATH
Organism: Arabidopsis thaliana
Length: 523 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROGF8_ARATH.

Description E-value Query
Range
Subject
Range
gi|91806471 - gi|91806471|gb|ABE65963.1| unknown [Arabidopsis thaliana]
863.0 [0..1] [523..1]

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Predicted Domain #1
Region A:
Residues: [1-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES  60
   61 PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE DMSGGGKGVS SALALSNAIT 120
  121 NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR 180
  181 QRGDLLMNIP ALRKLDAMLI DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK 240
  241 VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS 300
  301 IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL 360
  361 EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV GQAVLESYSR ILESLAYTVM 420
  421 SRIEDVLYTD TLALKQTLLA EETSD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2ntxA
Description: No description for 2ntxA was found.

Predicted Domain #2
Region A:
Residues: [446-523]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGRTTETDSE SAGSSNSGEE AEKHDPHSKT LLDFMGWNDN SSKGGDKPTK SPNLTPKKLS  60
   61 YLEKLENLNG FRSPKDRH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle