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View Structure Prediction Details

Protein: ALMTE_ARATH
Organism: Arabidopsis thaliana
Length: 543 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALMTE_ARATH.

Description E-value Query
Range
Subject
Range
gi|52354511 - gi|52354511|gb|AAU44576.1| hypothetical protein AT5G46610 [Arabidopsis thaliana]
414.0 [0..1] [543..1]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRVHERSM GMEEEGSTKN MKTKVLELPT KIKKILKNIW KVGKDDPRRV KHALKVGVSL  60
   61 TLVSLLYLME PLFKGIGNSA IWAVMTVVVV LEFSAGATLC KGLNRGLGTL IAGSLAFFIE 120
  121 FVANDSGKIF RAIFIGAAVF IIGALITYLR FIPYIKKNYD YGMLIFLLTF NLITVSSYRV 180
  181 DTVIKIAHER FYTIAMGVGI CLLMSLLVF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [210-543]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIWSGEDLHK STVAKLQGLS YSIEACVNEY FEEEEKDEET SDLSEDTIYN GYKTVLDSKS  60
   61 ADEALAMYAS WEPRHTRHCH RFPWKHYVKV GSVLRQFGYT VVALHGCLKT EIQTPRPLRG 120
  121 LFKDPCVRLA GEICKVLSEL AASIRNRRHC SPEILSDSLQ VALQDLNTAI KSQPKLFLGS 180
  181 SQNGNVSQGN SGRHNPNVAV SQHINKDTNE AASYQNTGTP RGERMSRFGP NVSFSRLRAD 240
  241 TLERRSAAAT NERKILRQQL SRIVVLTSLE FSEALPFAAF ASLLVEMVAR LDNVIEEVEE 300
  301 LGTIACFKDY DNNVDQKDVE VRVEKPADLV VGVE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.11
Match: 2efkA
Description: No description for 2efkA was found.

Predicted functions:

Term Confidence Notes
binding 0.086174985769922 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle