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View Structure Prediction Details

Protein: gi|20196941, gi|...
Organism: Arabidopsis thaliana
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20196941, gi|....

Description E-value Query
Range
Subject
Range
gi|22550395, gi|... - gi|22550395|gb|AAF44667.2|AF239617_1 beta-1,3-glucanase [Vitis vinifera], gi|225431926|ref|XP_002277...
392.0 [0..27] [365..16]

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Predicted Domain #1
Region A:
Residues: [1-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSKLLLLK FFFFFFFNLT SLEYQVDGAF VGTYGINYGR IADNIPSPEK VVLLLKQAKI  60
   61 RNVRIYDVDH TVLEAFSGTG LDLVVGLPNG FLKEMSSNAD HAFSWVKENI QSFLPKTRIR 120
  121 GIAIGNEVLG GGDSELAGAL LGAAKNVYNA LKKMNLEDTV QITTAHSQAV FSDSYPPSSC 180
  181 VFKENVVQFM KPLLEFFQQI GSPFCLNAYP FLAYTYNPKE IDINYALFKP TEGIYDPKTD 240
  241 LHYDNMLDAQ IDAAYMALQD AGFKKMEVMI TETGWASKGD SDEPAATPEN ARTYNYNLRK 300
  301 RLAKKKGTPL RPKTVLKAYI FALFNENSKP GKSSETHFGL FKPDGTISYD IGFNNLKSDS 360
  361 PKSLISSSKS ARYYVALVIS VSAFLLMI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.522879
Match: 2cygA
Description: Crystal structure at 1.45- resolution of the major allergen endo-beta-1,3-glucanase of banana as a molecular basis for the latex-fruit syndrome
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.32563207632796 bayes_pls_golite062009
hydrolase activity 0.85514037342026 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 0.80912338090552 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 0.41375210927547 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle