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View Structure Prediction Details

Protein: RLF27_ARATH
Organism: Arabidopsis thaliana
Length: 117 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLF27_ARATH.

Description E-value Query
Range
Subject
Range
gi|28628205 - gi|28628205|gb|AAO27367.1| rapid alkalinization factor 2 precursor [Populus balsamifera subsp. trich...
120.0 [0..10] [114..8]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTFFSFSF FFTSSLLLLL AATSATASTG NVTSGLRYDG CAPGDTVGEC ITATVEEEDE  60
   61 EGVEAVVRRI LQQRKYLSYK TLQKQPTCDG RIAGNCIGTV NPKGATCTYY QRCKRAA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.573 a.181.1 Antibiotic binding domain of TipA-like multidrug resistance regulators
View Download 0.298 a.28.2 Colicin E immunity proteins
View Download 0.278 d.55.1 Ribosomal protein L22
View Download 0.273 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.259 a.64.1 Saposin


YRC Informatics Platform - Version 3.0
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