YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|3779031, gi|1...
Organism: Arabidopsis thaliana
Length: 148 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3779031, gi|1....

Description E-value Query
Range
Subject
Range
gi|7433195, gi|6... - pir||T03689 1-aminocyclopropane-1-carboxylate oxidase - common tobacco, gi|602586|emb|CAA58232.1| 1-...
186.0 [0..1] [148..120]

Back

Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKAIFESLE IDGGDEAAEE LEKGSQVVVV NCYPPCPEPE LTPSNYGFLT LLLQDDVEGL  60
   61 QILYRDEWVT VDPIPGSFVV KRSSRGILIF IVLVNSTKPR RSVASMQSFP LISVVKPSPK 120
  121 LVDEHNPPQY MDTEFATFLE YVFSREPK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 1w9yA
Description: The structure of ACC oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.391261742890951 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle