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View Structure Prediction Details

Protein: PME17_ARATH
Organism: Arabidopsis thaliana
Length: 511 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PME17_ARATH.

Description E-value Query
Range
Subject
Range
PME2_CITSI - Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1
470.0 [0..2] [511..1]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAFRAYIIN FVILCILVAS TVSGYNQKDV KAWCSQTPNP KPCEYFLTHN SNNEPIKSES  60
   61 EFLKISMKLV LDRAILAKTH AFTLGPKCRD TREKAAWEDC IKLYDLTVSK INETMDPNVK 120
  121 CSKLDAQTWL STALTNLDTC RAGFLELGVT DIVLPLMSNN VSNLLCNTLA INKVPFNYTP 180
  181 PEKDGFPS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.39794
Match: 1xg2B
Description: Crystal structure of the complex between pectin methylesterase and its inhibitor protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [189-511]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WVKPGDRKLL QSSTPKDNAV VAKDGSGNFK TIKEAIDAAS GSGRFVIYVK QGVYSENLEI  60
   61 RKKNVMLRGD GIGKTIITGS KSVGGGTTTF NSATVAAVGD GFIARGITFR NTAGASNEQA 120
  121 VALRSGSDLS VFYQCSFEAY QDTLYVHSNR QFYRDCDVYG TVDFIFGNAA AVLQNCNIFA 180
  181 RRPRSKTNTI TAQGRSDPNQ NTGIIIHNSR VTAASDLRPV LGSTKTYLGR PWRQYSRTVF 240
  241 MKTSLDSLID PRGWLEWDGN FALKTLFYAE FQNTGPGAST SGRVTWPGFR VLGSASEASK 300
  301 FTVGTFLAGG SWIPSSVPFT SGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.522879
Match: 1gq8A
Description: Pectin methylesterase PemA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle