YRC Public Data Repository - Protein Structure Prediction

Protein:	NDS5A_ARATH
Organism:	Arabidopsis thaliana
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDS5A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|110736528 - gi\|110736528\|dbj\|BAF00231.1\| hypothetical protein [Arabidopsis thaliana]	160.0	[0..28]	[118..1]
gi\|30841446 - gi\|30841446\|gb\|AAP34361.1\| fiber protein Fb14 [Gossypium barbadense] gi\|66271051 - gi\|66271051\|gb\|AAY43803.1\| Fb14 [Gossypium hirsutum]	137.0	[0..36]	[117..1]
gi\|125562523 - gi\|125562523\|gb\|EAZ07971.1\| hypothetical protein OsI_30228 [Oryza sativa Indica Group] gi\|42407936, gi\|... - gi\|50948425\|ref\|XP_483740.1\| putative fiber protein Fb14 [Oryza sativa (japonica cultivar-group)], g...	126.0	[0..36]	[110..1]
gi\|46110060, gi\|... - gi\|46110060\|ref\|XP_382088.1\| hypothetical protein FG01912.1 [Gibberella zeae PH-1], gi\|42545827\|gb\|E...	116.0	[0..36]	[107..1]
gi\|39972413, gi\|... - gi\|39972413\|ref\|XP_367597.1\| hypothetical protein MG07508.4 [Magnaporthe grisea 70-15], gb\|EAA53231....	109.0	[0..45]	[107..99]
gi\|11544687, gi\|... - gi\|32412746\|ref\|XP_326853.1\| hypothetical protein ( (AL353822) conserved hypothetical protein [Neuro... gi\|85099074 - gi\|85099074\|ref\|XP_960712.1\| NADH:ubiquinone oxidoreductase 11.5kD subunit [Neurospora crassa OR74A]	109.0	[0..36]	[107..1]
gi\|49080242, gi\|... - gi\|71023937\|ref\|XP_762198.1\| hypothetical protein UM06051.1 [Ustilago maydis 521], ref\|XP_403666.1\| ...	108.0	[0..36]	[108..1]
gi\|88183058, gi\|... - gi\|88183058\|gb\|EAQ90526.1\| hypothetical protein CHGG_02461 [Chaetomium globosum CBS 148.51], gi\|1162...	104.0	[0..36]	[101..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDISGHPKTR TRTIFDEVDE PVWFCCVLPI WVGEEMASGW GITGNKGRCY DFWMDFSECM  60
   61 SHCREPKDCT LLREDYLECL HHSKEFQRRN RIYKEEQRKL RAASRKGEEA GDGTHNHH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.678	a.281.1	Description not found.
View	Download	0.475	a.66.1	Transducin (alpha subunit), insertion domain
View	Download	0.475	a.66.1	Transducin (alpha subunit), insertion domain
View	Download	0.471	a.8.4	Description not found.
View	Download	0.420	a.253.1	Description not found.
View	Download	0.416	d.58.16	Poly(A) polymerase, C-terminal domain
View	Download	0.416	a.118.8	TPR-like
View	Download	0.416	a.118.8	TPR-like
View	Download	0.412	a.47.2	t-snare proteins
View	Download	0.408	a.118.1	ARM repeat
View	Download	0.237	d.379.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits