| Protein: | PTR1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 570 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTR1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
399.0 | [0..7] | [564..33] |
|
Region A: Residues: [1-450] |
1 11 21 31 41 51
| | | | | |
1 MEEKDVYTQD GTVDIHKNPA NKEKTGNWKA CRFILGNECC ERLAYYGMGT NLVNYLESRL 60
61 NQGNATAANN VTNWSGTCYI TPLIGAFIAD AYLGRYWTIA TFVFIYVSGM TLLTLSASVP 120
121 GLKPGNCNAD TCHPNSSQTA VFFVALYMIA LGTGGIKPCV SSFGADQFDE NDENEKIKKS 180
181 SFFNWFYFSI NVGALIAATV LVWIQMNVGW GWGFGVPTVA MVIAVCFFFF GSRFYRLQRP 240
241 GGSPLTRIFQ VIVAAFRKIS VKVPEDKSLL FETADDESNI KGSRKLVHTD NLKFFDKAAV 300
301 ESQSDSIKDG EVNPWRLCSV TQVEELKSII TLLPVWATGI VFATVYSQMS TMFVLQGNTM 360
361 DQHMGKNFEI PSASLSLFDT VSVLFWTPVY DQFIIPLARK FTRNERGFTQ LQRMGIGLVV 420
421 SIFAMITAGV LEVVRLDYVK THNAYDQKQI
|
| Detection Method: |  |
| Confidence: | 5.154902 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.54194478414824 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.21266150105753 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 2.15783210522667 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.79369588808394 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| binding | 1.26757615356623 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
|
Region A: Residues: [451-570] |
1 11 21 31 41 51
| | | | | |
1 HMSIFWQIPQ YLLIGCAEVF TFIGQLEFFY DQAPDAMRSL CSALSLTTVA LGNYLSTVLV 60
61 TVVMKITKKN GKPGWIPDNL NRGHLDYFFY LLATLSFLNF LVYLWISKRY KYKKAVGRAH 120
121
|
| Detection Method: | |
| Confidence: | 0.956 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
| Matching Structure (courtesy of the PDB): |
|
