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View Structure Prediction Details

Protein: CHX25_ARATH
Organism: Arabidopsis thaliana
Length: 857 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CHX25_ARATH.

Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRSFPSDGW SALPTRFGFW PENPTTAGVV SSRVFSARLP EVCRQVHDKQ PFGMFKGENG  60
   61 MNYTFSTFLI EAILIIFFIK IVYVLLRPLR QPRIVCEIIG GMMIGPSMLG RNRNFNYYLF 120
  121 PPIANYICAN IGLMGFFYFF FLTAAKTDVA EIFK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [155-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APRKHKYIAA VSVLVPIACV GSTGAALKHK MDIRLQKPSS IGGVTFALGF TSFPVIYTVL  60
   61 RDMNLLNSEI GKFAMSVTLL GDMVGVYVLV LFEAMAQADG GGGAYSVIWF LISAAIMAAC 120
  121 LLLVVKRSFE WIVAKTPEGG LVNQNYIVNI LMGVLVSCFL TDMFGMAIAV GPIWLGLVVP 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [335-680]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGPPLGSTLA IRSETFVNEF LMPFSFALVG QKTNVNLISK ETWPKQISPL IYMSIVGFVT  60
   61 KFVSSTGAAL FFKVPTRDSL TLGLMMNLRG QIDILLYLHW IDKQMVGLPG YSVMVLYAIV 120
  121 VTGVTAPLIS FLYDPTRPYR SSKRRTIQHT PQNTETGLVL AVTDHDTFSG LITFLDFAYP 180
  181 TKTSPFSVFA IQLVELEGRA QPLFIAHDKK REEEYEEEEE PAERMGSRRV DQVQSAFKLY 240
  241 QEKRSECVTM HAYTAHASKH NMYQNICELA LTKKTAFILL PYQKERLQDA ALTELRDSGM 300
  301 LSVNADVLAH TPCSVCIYYE KGRLKNAMVR SSMDPQHTTN SSHMRQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.154902
Match: 1lnqA
Description: Potassium channel-related protein MthK
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [681-857]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMYRFVVLFL GGADNREALH LADRMTENPF INLTVIRFLA HNHEGEDERE KKLDDGVVTW  60
   61 FWVKNESNAR VSYKEVVVKN GAETLAAIQA MNVNDYDLWI TGRREGINPK ILEGLSTWSE 120
  121 DHQLGVIGDT VAGSVFASEG SVLVVQQQVR NQMGGDGFLN GKFDYKKLVS PWSHSHN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle