YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: APXS_ARATH
Organism: Arabidopsis thaliana
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APXS_ARATH.

Description E-value Query
Range
Subject
Range
gi|46093471 - gi|46093471|dbj|BAD14932.1| stromal ascorbate peroxidase [Brassica oleracea]
318.0 [0..1] [372..1]

Back

Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERVSLTLN GTLLSPPPTT TTTTMSSSLR STTAASLLLR SSSSSSRSTL TLSASSSLSF  60
   61 VRSLVSSPRL SSSSSLSQKK YRIASVNR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [89-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFNSTTAATK SSSSDPDQLK NAREDIKELL STKFCHPILV RLGWHDAGTY NKNIKEWPQR  60
   61 GGANGSLRFD IELKHAANAG LVNALNLIKD IKEKYSGISY ADLFQLASAT AIEEAGGPKI 120
  121 PMKYGRVDAS GPEDCPEEGR LPDAGPPSPA THLREVFYRM GLDDKDIVAL SGAHTLGRSR 180
  181 PERSGWGKPE TKYTKEGPGA PGGQSWTPEW LKFDNSYFKE IKEKRDEDLL VLPTDAAIFE 240
  241 DSSFKVYAEK YAADQDAFFK DYAVAHAKLS NLGAEFNPPE GIVI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.39794
Match: 1iynA
Description: Crystal structure of chloroplastic ascorbate peroxidase from tobacco plants and structural insights for its instability
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.426850936668086 bayes_pls_golite062009
oxidoreductase activity 0.10399831600382 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle