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View Structure Prediction Details

Protein: RTNLA_ARATH
Organism: Arabidopsis thaliana
Length: 275 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTNLA_ARATH.

Description E-value Query
Range
Subject
Range
RTNLB_ARATH - Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1
289.0 [0..1] [275..1]

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Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS  60
   61 SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM SGGVLGGATA AWVVFELMEY 120
  121 HLLTLLCHVM IVVLAVLFLW SNATMFI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [148-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKSPPKIPEV HIPEEPILQL ASGLRIEINR GFSSLREIAS GR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.30103
Match: 2g31A
Description: No description for 2g31A was found.

Predicted Domain #3
Region A:
Residues: [190-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLKKFLIAIA GLWVLSILGG CFNFLTLAYI ALVLLFTVPL AYDKYEDKVD PLGEKAMIEL  60
   61 KKQYAVLDEK VLSKIPLGPL KNKKKD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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