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View Structure Prediction Details

Protein: NUDT6_ARATH
Organism: Arabidopsis thaliana
Length: 283 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUDT6_ARATH.

Description E-value Query
Range
Subject
Range
NUDT7_ARATH - Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1
226.0 [0..1] [282..1]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNEDQESLL LQGVPDNYGG VKVNLTEPMT IEDFVPKLRA SLVYWSNQGT KGIWLKLADG  60
   61 LDNLIAPAKA EGFVCHHAER EYTMLTSWIA DVPSTLPANA 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.889 N/A N/A d.68.4 YhbY-like
View Download 0.862 N/A N/A d.68.4 YhbY-like
View Download 0.840 N/A N/A d.68.4 YhbY-like
View Download 0.783 N/A N/A d.68.4 YhbY-like
View Download 0.780 N/A N/A d.68.1 Translation initiation factor IF3, C-terminal domain

Predicted Domain #2
Region A:
Residues: [101-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHRIGVGAFV LNKKTKEVLV VQEIDGHFKG TGVWKLPTGV VKEGENIWEG ALREVEEETG  60
   61 IKTKFVEVLA FRESHQAFLE IKTDIFFLCE LEPTTFEIKK QDSEILAAKW MPIEEYVNQP 120
  121 WNQKKELFRF MANICLKRLQ EMEYMGFSKV LTTTSSGKES YLYCNTDHAN LLNATRGLAS 180
  181 TSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 2fb1A
Description: Crystal structure of Hypothetical protein BT0354
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.960699420760702 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle