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View Structure Prediction Details

Protein: gi|15239201, gi|...
Organism: Arabidopsis thaliana
Length: 260 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15239201, gi|....

Description E-value Query
Range
Subject
Range
gi|28924807, gi|... - gi|32418088|ref|XP_329522.1| GTP-BINDING PROTEIN YPT1 [Neurospora crassa], gi|28924807|gb|EAA33910.1...
gi|85109909 - gi|85109909|ref|XP_963146.1| GTP-BINDING PROTEIN YPT1 [Neurospora crassa OR74A]
180.0 [0..52] [242..44]

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Predicted Domain #1
Region A:
Residues: [1-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLEDLKIL AEQWSHQGIE YLQKIPPNQL YAAIGVLLFT TILLFLSIRL VRRTKSNTVL  60
   61 LSGLTGSGKT VLFYQLRDGS SHQGTVTSME PNEGTFVLHS ENTKKGKIKP VHLVDVPGHS 120
  121 RLRPKLEEFL PQAAAIVFVV DALEFLPNCR AASEYLYEIL TNANVVKKKI PVLLCCNKTD 180
  181 KLTAHTKEFI RKQMEKEIEK LRASRSAVST ADIANDFTIG IEGEVFSFTH CSNKVTVAEA 240
  241 SGLTGETIQI EDFIREYIKP 

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Detection Method: PSI-BLAST
Confidence: 13.69897
Match: 2fh5B
Description: The Structure of the Mammalian SRP Receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle