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View Structure Prediction Details

Protein: CESAA_ARATH
Organism: Arabidopsis thaliana
Length: 1065 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CESAA_ARATH.

Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAGSYRRYE FVRNRDDSDD GLKPLKDLNG QICQICGDDV GLTKTGNVFV ACNECGFPLC  60
   61 QSCYEYERKD GSQCCPQCKA RFRRHNGSPR VEVDEKEDDV NDIENEFDYT QGNNKARLPH 120
  121 R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.154902
Match: 1weoA
Description: Solution structure of RING-finger in the catalytic subunit (IRX3) of cellulose synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [122-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEEFSSSSRH EESLPVSLLT HGHPVSGEIP TPDRNATLSP CIDPQLPGIY QLLLLPVRIL  60
   61 DPSKDLNSYG LVNVDWKKRI QGWKLKQDKN MIHMTGKYHE GKGGEFEGTG SNGDELQMVD 120
  121 DARLPMSRVV 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [252-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HFPSARMTPY RIVIVLRLII LGVFLHYRTT HPVKDAYALW LTSVICEIWF AFSWLLDQFP  60
   61 KWYPINRETF LDRLALRYDR DGEPSQLAPV DVFVSTVDPM KEPPLVTANT VLSILAVDYP 120
  121 VDKVACYVSD DGSAMLTFEA LSETAEFSKK WVPFCKKFNI EPRAPEFYFS QKIDYLKD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [430-584]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIQPSFVKER RAMKREYEEF KVRINILVAK AQKIPEDGWT MEDGTSWPGN NPRDHPGMIQ  60
   61 VFLGHSGGLD TDGNELPRLI YVSREKRPGF QHHKKAGAMN ALIRVSAVLT NGAYLLNVDC 120
  121 DHYFNNSKAI KEAMCFMMDP AIGKKCCYVQ FPQRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.522879
Match: 3ckjA
Description: No description for 3ckjA was found.

Predicted Domain #5
Region A:
Residues: [585-676]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGIDLHDRYA NRNTVFFDIN LKGLDGIQGP VYVGTGCCFN RQALYGYDPV LTEEDLEPNI  60
   61 IVKSCFGSRK KGKSRKIPNY EDNRSIKRSD SN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [677-949]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPLFNMEDID EDVEGYEDEM SLLVSQKRLE KRFGQSPVFI AATFMEQGGL PSTTNPLTLL  60
   61 KEAIHVISCG YEAKTDWGKE IGWIYGSVTE DILTGFKMHA RGWISIYCVP SRPAFKGSAP 120
  121 INLSDRLNQV LRWALGSIEI LLSRHCPIWY GYNGRLKLLE RIAYINTIVY PITSIPLLAY 180
  181 CMLPAFCLIT NTFIIPEISN LASLCFMLLF ASIYASAILE LKWSDVALED WWRNEQFWVI 240
  241 GGTSAHLFAV FQGLLKVFAG IDTNFTVTSK ASD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [950-1065]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDGDFAELYV FKWTSLLIPP TTILLVNLVG IVAGVSYAIN SGYQSWGPLM GKLLFAFWVV  60
   61 AHLYPFLKGL LGRQNRTPTI VIVWSALLAS IFSLLWVRIN PFVSTTGVMS NSFMGE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle