YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|10177898, gi|...
Organism: Arabidopsis thaliana
Length: 191 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10177898, gi|....

Description E-value Query
Range
Subject
Range
gi|2098711 - gi|2098711|gb|AAB57670.1| pectinesterase [Citrus sinensis]
136.0 [0..29] [182..60]

Back

Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHYMNMNLI ITSLVMILIS HLPFSSTVNP DKPTKSIIDR ICNQTVNFNE CELIVTSQLH  60
   61 SPHANIATIT EVMTKRALTF ATETVSQIQD YLLPNATDTQ DKAVFSACEI AYKAVVSRLQ 120
  121 SAYTSMKNSD YVAMKAQQNQ ALGYIDVCVE RTNFFRRTPM VAANYYVRLT AKIASIAGQI 180
  181 LAPSTTTSLS P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.154902
Match: 1xg2B
Description: Crystal structure of the complex between pectin methylesterase and its inhibitor protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle