YRC Public Data Repository - Protein Structure Prediction

Protein:	FH7_ARATH
Organism:	Arabidopsis thaliana
Length:	929 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FH7_ARATH.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	377.0	[0..6]	[409..1396]
gi\|73989079 - gi\|73989079\|ref\|XP_857344.1\| PREDICTED: similar to diaphanous homolog 3 isoform 4 [Canis familiaris]	376.0	[0..439]	[927..491]
gi\|94405364 - gi\|94405364\|ref\|XP_992759.1\| PREDICTED: similar to Protein diaphanous homolog 1 (Diaphanous-related ...	370.0	[0..343]	[927..662]
DIAPH2 - diaphanous homolog 2 (Drosophila)	369.0	[0..448]	[927..623]
gi\|109079043 - gi\|109079043\|ref\|XP_001089232.1\| PREDICTED: similar to diaphanous 1 [Macaca mulatta]	368.0	[0..444]	[927..768]

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Predicted Domain #1

Region A:
Residues: [1-502]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLFRKNGS SSRRKIKEKL RGRHSDRGGK REEDERYGGS GSDLPPPPSP WGFLFPEDFV  60
   61 RIDGNLKAVI VDDEGLDVIY WKKLLELENS GKIRKNPKPR RRGDKSGDGF RRTGADQDDN 120
  121 DDGDDEVGDE SIEEAFSFHV KKSQSASSSG GEIRDQSNNG GGGGGGGGGG GRYYTSSSAS 180
  181 PSRPSSSSAS AASPSRTSYA TSAGSDYGGG GGGKQSQSKF QAPGGGSFPS SPSQIHSGGG 240
  241 RSPPLPLPPG QFTAGNASFP SSTQPPPGQY MAGNASFPSS TPPPPGQYMA GNAPFSSSTP 300
  301 LPPGQYPAVN AQLSTSAPSV PLPPGQYTAV NAPFSTSTQP VSLPPGQYMP GNAALSASTP 360
  361 LTPGQFTTAN APPAPPGPAN QTSPPPPPPP SAAAPPPPPP PKKGPAAPPP PPPPGKKGAG 420
  421 PPPPPPMSKK GPPKPPGNPK GPTKSGETSL AVGKTEDPTQ PKLKPLHWDK MNPDASRSMV 480
  481 WHKIDGGSFN FDGDLMEALF GY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [503-929]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VARKPSESNS VPQNQTVSNS VPHNQTYILD PRKSQNKAIV LKSLGMTKEE IIDLLTEGHD  60
   61 AESDTLEKLA GIAPTPEEQT EIIDFDGEPM TLAYADSLLF HILKAVPSAF NRFNVMLFKI 120
  121 NYGSEVAQQK GSLLTLESAC NELRARGLFM KLLEAILKAG NRMNAGTARG NAQAFNLTAL 180
  181 RKLSDVKSVD AKTTLLHFVV EEVVRSEGKR AAMNKNMMSS DNGSGENADM SREEQEIEFI 240
  241 KMGLPIIGGL SSEFTNVKKA AGIDYDSFVA TTLALGTRVK ETKRLLDQSK GKEDGCLTKL 300
  301 RSFFESAEEE LKVITEEQLR IMELVKKTTN YYQAGALKER NLFQLFVIIR DFLGMVDNAC 360
  361 SEIARNQRKQ QQQRPATTVA GASSSPAETP SVAAAPQRNA VRFPILPPNF MSESSRYSSS 420
  421 SDSDSES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.69897
Match:	2j1dG
Description:	No description for 2j1dG was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits