YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15230132, gi\|...
Organism:	Arabidopsis thaliana
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15230132, gi|....

Description	E-value	Query Range	Subject Range
gi\|41349920, gi\|... - gi\|41349920\|gb\|AAS00345.1\| At3g24570 [Arabidopsis thaliana], gi\|38454114\|gb\|AAR20751.1\| At3g24570 [A...	265.0	[0..1]	[235..1]
gi\|222618026, gi... - gi\|34904256\|ref\|NP_913475.1\| P0452F10.16 [Oryza sativa (japonica cultivar-group)], gi\|222618026\|gb\|E...	234.0	[0..1]	[232..1]
gi\|32416286, gi\|... - gi\|32416286\|ref\|XP_328621.1\| hypothetical protein [Neurospora crassa], gi\|28924037\|gb\|EAA33195.1\| co... gi\|85107726 - gi\|85107726\|ref\|XP_962431.1\| hypothetical protein NCU07915 [Neurospora crassa OR74A]	203.0	[0..1]	[212..38]
gi\|59802852 - gi\|59802852\|gb\|AAX07641.1\| hypothetical protein [Magnaporthe grisea] gi\|39940356, gi\|... - gi\|39940356\|ref\|XP_359715.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA52370....	198.0	[0..2]	[213..39]
gi\|67521576, gi\|... - gi\|67521576\|ref\|XP_658851.1\| hypothetical protein AN1247.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	194.0	[0..2]	[213..38]
gi\|46116304, gi\|... - gi\|46116304\|ref\|XP_384170.1\| hypothetical protein FG03994.1 [Gibberella zeae PH-1], gi\|42550619\|gb\|E...	193.0	[0..1]	[212..38]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLWRWYQR CLTVHPVKTQ VISSGFLWGF GDVTAQYITH STAKRRLLRL TETNKDADAD  60
   61 AEIKVKWKQD AEFKVNWKRV AITSMFGFGF VGPVGHFWYE GLDKFIKLKL RYVPKSTRFV 120
  121 AAKVAMDGLI FGPVDLLVFF TYMGFATGK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [150-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTAEVKEGLK RDFLPALALE GGAWPLLQIA NFRYVPVQYQ LLYVNIFCLV DSAFLSWVEQ  60
   61 QKDAAWKQWF TSSFQPLKER GGQGGV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.251812
Match:	PF04117.3
Description:	No description for PF04117.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.955	N/A	N/A	a.46.1	Methionine synthase domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits