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View Structure Prediction Details

Protein: LOG7_ARATH
Organism: Arabidopsis thaliana
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOG7_ARATH.

Description E-value Query
Range
Subject
Range
gi|87240936 - gi|87240936|gb|ABD32794.1| Conserved hypothetical protein 730 [Medicago truncatula]
205.0 [0..2] [215..7]
gi|19548083, gi|... - gi|19548083|gb|AAL87406.1| T3B23.2/T3B23.2 [Arabidopsis thaliana], gi|13605607|gb|AAK32797.1|AF36162...
204.0 [0..2] [213..1]
gi|50926504, gi|... - gi|50926504|ref|XP_473199.1| OSJNBb0061C13.8 [Oryza sativa (japonica cultivar-group)], gi|32487858|e...
203.0 [0..1] [202..1]
gi|88713678, gi|... - gi|88713678|ref|ZP_01107760.1| protoporphyrinogen oxidase [Flavobacteriales bacterium HTCC2170], gi|...
201.0 [0..8] [196..289]

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Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETKSRFKR ICVFCGSSSG KKPSYQEAAI QLGNELVERR IDLVYGGGSV GLMGLVSQAV  60
   61 HHGGRHVLGV IPKTLMPREI TGETIGEVKA VADMHQRKAE MARQADAFIA LPGGYGTLEE 120
  121 LLEVITWAQL GIHRKPVGLL NVDGYYNSLL TFIDKAVDEG FISPMARRII VSAPNAKELV 180
  181 RQLEEYEPEF DEITSKLVWD EVDRISYVPG SEVATAT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.39794
Match: 2a33A
Description: X-Ray Structure of a Lysine Decarboxylase-Like Protein from Arabidopsis Thaliana Gene AT2G37210
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle