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View Structure Prediction Details

Protein: gi|6466950, gi|1...
Organism: Arabidopsis thaliana
Length: 504 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6466950, gi|1....

Description E-value Query
Range
Subject
Range
gi|21537309 - gi|21537309|gb|AAM61650.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-...
402.0 [0..1] [504..1]

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Predicted Domain #1
Region A:
Residues: [1-504]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP  60
   61 KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE RGLVASQNLR KGEKLLFVPP 120
  121 SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL 180
  181 LYWTRTELDM YLEASQIRER AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS 240
  241 FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV 300
  301 FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC 360
  361 FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT STKNDLKYPE IEEDALQFIL 420
  421 DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR 480
  481 RLRDIRSGEL KALRLFSGLR NFFK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.69897
Match: 1mlvA
Description: RuBisCo LSMT C-terminal, substrate-binding domain; RuBisCo LSMT catalytic domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle