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View Structure Prediction Details

Protein: NDUB8_ARATH
Organism: Arabidopsis thaliana
Length: 125 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUB8_ARATH.

Description E-value Query
Range
Subject
Range
gi|222613239, gi... - gi|37536698|ref|NP_922651.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|31433425|g...
212.0 [0..1] [125..1]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRLSGVAS RIMGGNGVVA RSVGSSLRQR AGMGLPVGKH IVPDKPLSVN DELMWDNGTA  60
   61 FPEPCIDRIA DTVGKYEALA WLSGGLGFFV GLGLLAVLND KASKVPFTPR VYPYDNLRVE 120
  121 LGGEP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.543 d.58.3 Protease propeptides/inhibitors
View Download 0.412 a.46.1 Methionine synthase domain
View Download 0.344 a.60.1 SAM/Pointed domain
View Download 0.333 a.60.1 SAM/Pointed domain
View Download 0.327 a.77.1 DEATH domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle