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View Structure Prediction Details

Protein: RLF23_ARATH
Organism: Arabidopsis thaliana
Length: 138 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLF23_ARATH.

Description E-value Query
Range
Subject
Range
gi|28628203 - gi|28628203|gb|AAO27366.1| rapid alkalinization factor 1 precursor [Populus balsamifera subsp. trich...
154.0 [0..4] [136..1]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGLSRNSGA AAIFAILLIL AVHNWSVAVS SQSTEFAGDF PPFETECRGT IAECSVSAAL  60
   61 GDGGDLFYGG GEMGEEFEMD SEINRRILAT RRYISYGALR RNTIPCSRRG ASYYNCRRGA 120
  121 QANPYSRGCS AITRCRRS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 40.124939
Match: PF05498.2
Description: No description for PF05498.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.270 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.249 N/A N/A a.74.1 Cyclin-like
View Download 0.242 N/A N/A a.1.1 Globin-like
View Download 0.213 N/A N/A a.7.7 BAG domain
View Download 0.212 N/A N/A a.71.1 Endoplasmic reticulum protein ERP29, C-domain


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