YRC Public Data Repository - Protein Structure Prediction

Protein:	MBF1A_ARATH
Organism:	Arabidopsis thaliana
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBF1A_ARATH.

Description	E-value	Query Range	Subject Range
MBF1B_ARATH - Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1	124.0	[0..1]	[142..1]
gi\|157755759 - gi\|157755759\|ref\|XP_001670223.1\| Hypothetical protein CBG06149 [Caenorhabditis briggsae AF16] gi\|39593818, gi\|... - gi\|39593818\|emb\|CAE62111.1\| Hypothetical protein CBG06149 [Caenorhabditis briggsae], gi\|187034426\|em...	113.0	[0..1]	[141..1]
gi\|125561310, gi... - gi\|125561310\|gb\|EAZ06758.1\| hypothetical protein OsI_29003 [Oryza sativa Indica Group], gi\|125561308... gi\|215767745, gi... - gi\|50944921\|ref\|XP_481988.1\| putative ethylene-responsive transcriptional coactivator [Oryza sativa ...	113.0	[0..1]	[142..1]
gi\|1632831, gi\|7... - pir\|\|T10078 hypothetical protein - castor bean, gi\|1632831\|emb\|CAA89698.1\| orf [Ricinus communis]	113.0	[0..1]	[142..1]
mbf-1 - Helix-turn-helix status:Confirmed UniProt:Q9XTV4 protein_id:CAB09112.1	110.0	[0..1]	[141..1]
gi\|20086364 - gi\|20086364\|dbj\|BAB88859.1\| putative multiprotein bridging factor 1 [Nicotiana tabacum]	108.0	[0..5]	[142..3]
gi\|19225065 - gi\|19225065\|gb\|AAL32037.2\|AF439278_1 ethylene-responsive transciptional coactivator-like protein [Re...	108.0	[0..2]	[141..4]
gi\|2285788, gi\|1... - gi\|2285788\|dbj\|BAA21658.1\| Multiprotein bridging factor 1 [Bombyx mori], gi\|112984062\|ref\|NP_0010368...	108.0	[0..9]	[142..2]
MBF1_ASHGO - Multiprotein-bridging factor 1 OS=Ashbya gossypii GN=MBF1 PE=3 SV=1 MBF1_ASHGO - Multiprotein-bridging factor 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL...	108.0	[0..7]	[141..1]
gi\|109109703 - gi\|109109703\|ref\|XP_001092659.1\| PREDICTED: similar to endothelial differentiation-related factor 1 ...	107.0	[0..9]	[135..4]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT  60
   61 SLNTKMLDDD T

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.173925
Match:	PF08523.1
Description:	No description for PF08523.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [72-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENLTHERVPT ELKKAIMQAR TDKKLTQSQL AQIINEKPQV IQEYESGKAI PNQQILSKLE  60
   61 RALGAKLRGK K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	1x57A
Description:	Solution structures of the HTH domain of human EDF-1 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits