YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PRXQ_ARATH
Organism: Arabidopsis thaliana
Length: 216 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRXQ_ARATH.

Description E-value Query
Range
Subject
Range
PRXQ_POPJC - Peroxiredoxin Q, chloroplastic OS=Populus jackii GN=PRXQ PE=1 SV=1
PRXQ_POPJC - Peroxiredoxin Q, chloroplastic OS=Populus jackii GN=PRXQ PE=1 SV=1
174.0 [0..6] [215..2]

Back

Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASSSSFTL CNHTTLRTLP LRKTLVTKTQ FSVPTKSSES NFFGSTLTHS SYISPVSSSS  60
   61 LKGLIFAKVN KGQAAPDFTL KDQNGKPVSL KKYKGKPVVL YFYPADETPG CTKQACAFRD 120
  121 SYEKFKKAGA EVIGISGDDS ASHKAFASKY KLPYTLLSDE GNKVRKDWGV PGDLFGALPG 180
  181 RQTYVLDKNG VVQLIYNNQF QPEKHIDETL KFLKAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.30103
Match: 1qmvA
Description: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
antioxidant activity 2.76704361987669 bayes_pls_golite062009
peroxidase activity 2.4535286431475 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 2.4535286431475 bayes_pls_golite062009
peroxiredoxin activity 1.60801416784303 bayes_pls_golite062009
thioredoxin peroxidase activity 1.48148817403114 bayes_pls_golite062009
glutathione peroxidase activity 1.40767929314355 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.17905334170166 bayes_pls_golite062009
disulfide oxidoreductase activity 0.691543699484554 bayes_pls_golite062009
catalytic activity 0.672192331361968 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle