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View Structure Prediction Details

Protein: RCH2_ARATH
Organism: Arabidopsis thaliana
Length: 1141 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for RCH2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLHSLIFFS SSSSSLLFSF FFIFIFCFSL SDAEQNPEAS ILYSWLHSSS PTPSSLSLFN  60
   61 WNSIDNTPCN NWTFITCSSQ GFITDIDIES VPLQLSLPKN LPAFRSLQKL TISGANLTGT 120
  121 LPESLGDCLG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.39794
Match: 2omuA
Description: No description for 2omuA was found.

Predicted Domain #2
Region A:
Residues: [131-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKVLDLSSNG LVGDIPWSLS KLRNLETLIL NSNQLTGKIP PDISKCSKLK SLILFDNLLT  60
   61 GSIPTELGKL SGLEVIRIGG NKEISGQIPS EIGDCSNLTV LGLAETSVSG NLPSSLGKLK 120
  121 KLETLSIYTT MISGEIPSDL GN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 2ellA
Description: No description for 2ellA was found.

Predicted Domain #3
Region A:
Residues: [273-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSELVDLFLY ENSLSGSIPR EIGQLTKLEQ LFLWQNSLVG GIPEEIGNCS NLKMIDLSLN  60
   61 LLSGSIPSSI GRLSFLEEFM ISDNKFSGSI PTTISNCSSL VQLQLDKNQI SGLIPSELGT 120
  121 LTKLTLFFAW SNQLEGSIPP GLADCTDLQA LDLSRNSLTG TIPSGLFMLR NLTKLLLI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [451-600]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNSLSGFIPQ EIGNCSSLVR LRLGFNRITG EIPSGIGSLK KINFLDFSSN RLHGKVPDEI  60
   61 GSCSELQMID LSNNSLEGSL PNPVSSLSGL QVLDVSANQF SGKIPASLGR LVSLNKLILS 120
  121 KNLFSGSIPT SLGMCSGLQL LDLGSNELSG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.30103
Match: 2omvA
Description: No description for 2omvA was found.

Predicted Domain #5
Region A:
Residues: [601-759]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIPSELGDIE NLEIALNLSS NRLTGKIPSK IASLNKLSIL DLSHNMLEGD LAPLANIENL  60
   61 VSLNISYNSF SGYLPDNKLF RQLSPQDLEG NKKLCSSTQD SCFLTYRKGN GLGDDGDASR 120
  121 TRKLRLTLAL LITLTVVLMI LGAVAVIRAR RNIDNERDS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [760-1141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELGETYKWQF TPFQKLNFSV DQIIRCLVEP NVIGKGCSGV VYRADVDNGE VIAVKKLWPA  60
   61 MVNGGHDEKT KNVRDSFSAE VKTLGTIRHK NIVRFLGCCW NRNTRLLMYD YMPNGSLGSL 120
  121 LHERRGSSLD WDLRYRILLG AAQGLAYLHH DCLPPIVHRD IKANNILIGL DFEPYIADFG 180
  181 LAKLVDEGDI GRCSNTVAGS YGYIAPEYGY SMKITEKSDV YSYGVVVLEV LTGKQPIDPT 240
  241 VPEGIHLVDW VRQNRGSLEV LDSTLRSRTE AEADEMMQVL GTALLCVNSS PDERPTMKDV 300
  301 AAMLKEIKQE REEYAKVDLL LKKSPPPTTT MQEECRKNEM MMIPAAAASS SKEMRREERL 360
  361 LKSNNTSFSA SSLLYSSSSS IE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.221849
Match: 2o8yA
Description: No description for 2o8yA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle